PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517119.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 634aa MW: 70028.8 Da PI: 6.9786

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	293	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023517119.1 293 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 352 78*****************988886678446***********************98 PP
2	AP2	46.9	6.7e-15	395	446	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023517119.1 395 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MNNVNGNNCN WLGFSVSPNV NMELSSSSAA AASPSIPANL FHSPSQYNYG IYYGVDGEHG 60 GFYSPLSVMP LKSDGSICSM EALSRQHPEA VSSSTPKLED FFGGATMGSH HYESNAREAI 120 ALSLDSIFCH QNPTHEPNNQ PYAHFSSLRS REVMLQDSKV ILPDGCNLQQ EQQQQHPTVA 180 ESEISGMKNW AVPRGYAATD NSSFEQKMVS FMSENGGESG PINAMAYGDL QSLSLSMTMS 240 PSSQSSCVTV TQHVSPAMGD CSAMDSKKRI HEKLDQKQIV HRKSLDTFGQ RTSQYRGVTR 300 HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL GGYDMEEKAA RAYDLAALKY WGPSTHINFP 360 LENYQKELEE MKNMSRQEYV AHLRRRSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK 420 DLYLGTFSTQ EEAAEAYDIA AIKFRGMNAV TNFDITRYDV ERIIASNTLL SGDVAKRKQQ 480 PDFNNESLSE SPPTHNSNAE ASMPLPSQSS QSESDWKMAL YQSSQQQLIP KPRLLSAITD 540 DGSQLGVEDS AKMMGAHFSN ASSMVTSCSL SSSREESPDK TSLSMVFGMP QPTSRPFAAP 600 ASNMNSSSWI ASAQQLRAAN CMSQLPVFAG WTDT

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MNNVNGNNCN WLGFSVSPNV NMELSSSSAA AASPSIPANL FHSPSQYNYG IYYGVDGEHG  60
GFYSPLSVMP LKSDGSICSM EALSRQHPEA VSSSTPKLED FFGGATMGSH HYESNAREAI  120
ALSLDSIFCH QNPTHEPNNQ PYAHFSSLRS REVMLQDSKV ILPDGCNLQQ EQQQQHPTVA  180
ESEISGMKNW AVPRGYAATD NSSFEQKMVS FMSENGGESG PINAMAYGDL QSLSLSMTMS  240
PSSQSSCVTV TQHVSPAMGD CSAMDSKKRI HEKLDQKQIV HRKSLDTFGQ RTSQYRGVTR  300
HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL GGYDMEEKAA RAYDLAALKY WGPSTHINFP  360
LENYQKELEE MKNMSRQEYV AHLRRRSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGMNAV TNFDITRYDV ERIIASNTLL SGDVAKRKQQ  480
PDFNNESLSE SPPTHNSNAE ASMPLPSQSS QSESDWKMAL YQSSQQQLIP KPRLLSAITD  540
DGSQLGVEDS AKMMGAHFSN ASSMVTSCSL SSSREESPDK TSLSMVFGMP QPTSRPFAAP  600
ASNMNSSSWI ASAQQLRAAN CMSQLPVFAG WTDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-121	AP2 family protein