PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517197.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 284aa    MW: 33235.2 Da    PI: 8.9294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v ++G  +W++Ia++++ gR++k+c++rw++ 
   XP_023517197.1 24 RGHWRPAEDEKLRQLVDKYGAQNWNSIAQKLQ-GRSGKSCRLRWFNQ 69
                     899*****************************.***********996 PP
2Myb_DNA-binding60.73.1e-1976119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   XP_023517197.1  76 RKPFSEEEEERLLAAHQIHGNK-WSLIARLFP-GRTDNAVKNHWHV 119
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MMMMMKDSGL DHHVDYEYKS SCSRGHWRPA EDEKLRQLVD KYGAQNWNSI AQKLQGRSGK  60
SCRLRWFNQL DPRIIRKPFS EEEEERLLAA HQIHGNKWSL IARLFPGRTD NAVKNHWHVI  120
MARKQRERSK LCGSKRTFQE FSASNFPGNQ TESLGTYNIN DNNNSFLELQ NSHKDGTVWN  180
FRHYLKGSID NNIPILHDTY HKLRTPSSAR VCYPNHNIPF GVYEFGSNSE VIKRELAFVN  240
FIANTDRHRH CHHRLLHDQE RQEDESLTDK DVPFIDFLGV GVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.19e-69MYB family protein