PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517275.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 234aa MW: 26045.4 Da PI: 7.9622

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_023517275.1 2 SCNGCRVLRKGCSESCILRPCLqwidtSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQA 96 6*******************9998777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_023517275.1 97 AVETVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MSCNGCRVLR KGCSESCILR PCLQWIDTSE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHICQAAVET VLRGGTLRPM NEFLAAGSPN 120 PASDETSEAE VACTDMWKLR DSYPNSRFSN SRSRLSPKRK RSEESTKNQL NDLDLRLTPN 180 FPAKSTRRAA TPSMNSEESE TTTCFESGGL IDHHHRHYHP EELVPERKLL NLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-82	LBD family protein