PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517308.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 290aa    MW: 32926.6 Da    PI: 9.0717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3703.1e-2221111199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+    +++s+r+++p  f++ + g    + + +l+d+sg+sW v+l  +  ++++++++GW+eFv+++ Lk gDf+vF++dg+s+f   vk
  XP_023517308.1  21 FFKVF--LPNSSSRRMSIPPAFVKYFRGC--IPSEAVLKDQSGQSWHVTL--EELKNSVFFKNGWQEFVDSHCLKYGDFLVFQYDGNSTF--DVK 107
                     89999..667777889*******555444..4558***************..999999****************************9999..9** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_023517308.1 108 IFSK 111
                     9997 PP
2B347.82.6e-152022891299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                     +++ + +pk+ + +h++    + ++++ de+grsW v+   +  s++ + lt+GW  F +a+ L++ D+++F+  l ++  ++el+vk+ r+
  XP_023517308.1 202 SHNAIHIPKRVMVAHNIL--LKPDVVIVDEKGRSWLVTA--KPISRSrFALTTGWPIFFRAHSLRVDDICTFEfvLGSDnICGELNVKITRS 289
                     567799******999544..3338***************..5555555*************************5544556889999998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MARSLVELRD PSSRNPSSLE FFKVFLPNSS SRRMSIPPAF VKYFRGCIPS EAVLKDQSGQ  60
SWHVTLEELK NSVFFKNGWQ EFVDSHCLKY GDFLVFQYDG NSTFDVKIFS KNGCKKELIS  120
GTSSLIPEVK VKDEPRSEEE YSTSLTRCKR NDSEVRSSDC SGTAPKSRKI STTNLEELSP  180
SKTANHVSME PPTFELLVKH WSHNAIHIPK RVMVAHNILL KPDVVIVDEK GRSWLVTAKP  240
ISRSRFALTT GWPIFFRAHS LRVDDICTFE FVLGSDNICG ELNVKITRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-36B3 family protein