PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517365.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 294aa MW: 31045.3 Da PI: 9.6281

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.4e-07	34	58	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H XP_023517365.1 34 KSKPCTKFFSTAGCPFGESCHFLHH 58 7789********************6 PP
2	zf-CCCH	27.5	5.5e-09	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f Ck+Gd+C+FaHg+ XP_023517365.1 101 KTRMCNKFNTAEGCKFGDKCNFAHGE 126 89**********************96 PP
3	zf-CCCH	35.2	2.1e-11	261	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C++fa+ G C +G+rC+FaHg XP_023517365.1 261 YKTKMCDNFAK-GSCTFGERCHFAHG 285 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MDMRKRRPES AFNSNGTFKK HKQELEPLST VGSKSKPCTK FFSTAGCPFG ESCHFLHHVP 60 GGYNVVAQMM NLPPVGSQPS RNMAAPPSVT NGGSSAPSQV KTRMCNKFNT AEGCKFGDKC 120 NFAHGEWELG RPPSHDNPRA MGGHMVGRMG GRMDLPQPGP AASFGASATA KISIDASLAG 180 AIIGKGGINS KQICRQTGAK LSIRDHESDT NLRNIELEGT FEQINEASAM VRELIITVSM 240 AGPGKAPGAM GGGPAPSGSN YKTKMCDNFA KGSCTFGERC HFAHGAAELR KSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	5e-58	C3H family protein