PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517485.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 747aa    MW: 82517.5 Da    PI: 6.5971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.94e-14941311956
                     HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     F+++++p+ ++r eL+++lgL+  qVk+WFqN+R+++k
  XP_023517485.1  94 FKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMK 131
                     9**********************************998 PP
2START196.11.6e-612654861206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el ++a+a+ep+Wv          +n+ e+l++f  + +      +++a+r+s++v+m++++lv +++d   qW++ +     +a+t
  XP_023517485.1 265 ELAVSAMDELTRMAQAGEPLWVPGDsksseVVLNESEYLTSFRGGIGpkslgLRTQASRVSAIVFMNHVKLVDIFMDAT-QWSTVFCgivsRAST 358
                     57899****************954444457899*********77776********************************.******99999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +ev+s g      gal++m+ae+q++splvp R+ +fvRy++q+++g+w+++dvS+d  ++ p      +++++pSg+li++++ng+sk+twveh
  XP_023517485.1 359 VEVLSAGlpgncnGALHVMSAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVADVSLDTLSPSPI----PKSRRRPSGCLIQELPNGYSKITWVEH 449
                     *************************************************************994....55556********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++  +++++r+lv+sgla+gak+wvatl+rqce+
  XP_023517485.1 450 VEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCER 486
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    
MFDPDMFDTH HHMLDMAFNT SENELENVRD DDFEAKSGAE MLGEACGSDQ QRSKKKRYNR  60
HTQHQIQEME ACVTTKSKRL IFFFFFFFFF FFXFKECPHP DDKQRMELSR ELGLEPLQVK  120
FWFQNKRTQM KAQHERHENA MLKADNEKLR AENIRYREAF AHSTCPNCGS STALGEMSFE  180
DQHLRIENSR LRDEIDRMNG YAPKCAKPLP SSYYHLPSNA PTRSLDLGIT NFGQQSCFVG  240
EMYGTADFLR SISRPSEADK PVIVELAVSA MDELTRMAQA GEPLWVPGDS KSSEVVLNES  300
EYLTSFRGGI GPKSLGLRTQ ASRVSAIVFM NHVKLVDIFM DATQWSTVFC GIVSRASTVE  360
VLSAGLPGNC NGALHVMSAE FQVPSPLVPT RENYFVRYCK QHSDGTWAVA DVSLDTLSPS  420
PIPKSRRRPS GCLIQELPNG YSKITWVEHV EVDETGVPSM YRPLVNSGLA FGAKRWVATL  480
DRQCERLATS MATTIATGEL RVMSSIEGRK SMLKLAERMV TSFCAGVGAS SIHAWTALPA  540
AGSDDVRVVT RKSTDEPGRP PGVVLSAATS FWIPVSPKVV FDFLRKEKSR SEWDILSNRG  600
LVQEMANIAN GRHSGNCVSL LRVNSANSSQ SNMLILQESC TDSTGSYVVY APVDTVAMNV  660
VLSGCDPDYV ALLPSGFAIL PDGPAGSNGG GILEVGSGGS LITVAFQILV DSVPTARLSI  720
GSVATVNSLI KCTVERIRAA VMRETHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein