PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517499.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 308aa MW: 33262.2 Da PI: 8.3373

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I+r + gR++k+c++rw + XP_023517499.1 12 KGPWSPEEDDALQRLVQKHGPRNWSLISRSIH-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	54.2	3.3e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++ +G++ W+tIar + gRt++ +k++w++ XP_023517499.1 66 PFSPEEDETIIRAHANFGNR-WATIARLLS-GRTDNAVKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MAVNRNEMDR IKGPWSPEED DALQRLVQKH GPRNWSLISR SIHGRSGKSC RLRWCNQLSP 60 QVEHRPFSPE EDETIIRAHA NFGNRWATIA RLLSGRTDNA VKNHWNSTLK RKCSSMMNEG 120 FEGESNSQPL KKSFSAGAAV NISNGLYMNP GSPSGSDISD SSVPVVSPIV YRPVARTGSV 180 IPPGESTLSS ATDPPTSLSL SLPGVGAAGE SSNREGSGST AQVPLLEAFA QIQSMAASEL 240 ARASQLDNRP DESAEKINGF GIFSADLMAV MQEMIRSEVK SYMEGLSDPR GRGCFQQAKA 300 GGIRNVGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	7e-83	MYB family protein