PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517533.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 905aa MW: 100005 Da PI: 6.7576

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	349	448	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_023517533.1 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGK 441 89************************666677788***********99899999999.*******************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_023517533.1 442 LVMGFRK 448 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence
MSSAVTAASS SSSSLSTKPC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF 60 CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPVWPP 120 SLLFHSALPD RLKDLSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA 180 LNKLNTSERL PISLEKRKNE DFSERFSNGS LRQCGQDLCE NGTAGGINCE DKPSSCSSIP 240 QQSSFVKEDT CTTQYGLNVP YAPPNEPSTR SRMSGTHLRP TPPSPLPKQV HTNLQNGADP 300 SSETQLRNGR PRGDSRGRNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR 360 IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI 420 QSMQLQAGDI VTFSRLEPEG KLVMGFRKAS TAADQENETN KTKNGAPAHG DVSNIKVKAE 480 LADPNSWTKV DKSGYIAKEV LGVKPSISRK RKNSTLGSKS KRLRIENEDM IELKITWEEA 540 QGLLRPPPNQ LPNIVVIEGF EFEEYEDAPV LGKPTIIPPD NTCERIQWIQ CEDCLKWRKL 600 PASALLPSKW ICSDNSWDPE RSFCSAAQEL STEKLEELLS PSNSAAVQKM KAAKLEPDNV 660 EALEGLDTLA NLAILEEGEA SQAPGQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC 720 NVCLTVKRRF QTLMLRREKK QSEKEAETTR QRHQFQDEMF LDRSMDDESL TFSNTGPSKL 780 IVEGKMTDGS DEDPNRNKPS TSPFKGQIDL NMQPEREEEL SPGSDSGSMM KVLQDTGDRF 840 LEQQRSNSGG AGSSSSDPLE PGGEREHRVE NSSNVIDLGS SNLDADKDHP GTLSFNASAS 900 MSATG

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence

MSSAVTAASS SSSSLSTKPC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF  60
CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPVWPP  120
SLLFHSALPD RLKDLSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA  180
LNKLNTSERL PISLEKRKNE DFSERFSNGS LRQCGQDLCE NGTAGGINCE DKPSSCSSIP  240
QQSSFVKEDT CTTQYGLNVP YAPPNEPSTR SRMSGTHLRP TPPSPLPKQV HTNLQNGADP  300
SSETQLRNGR PRGDSRGRNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR  360
IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI  420
QSMQLQAGDI VTFSRLEPEG KLVMGFRKAS TAADQENETN KTKNGAPAHG DVSNIKVKAE  480
LADPNSWTKV DKSGYIAKEV LGVKPSISRK RKNSTLGSKS KRLRIENEDM IELKITWEEA  540
QGLLRPPPNQ LPNIVVIEGF EFEEYEDAPV LGKPTIIPPD NTCERIQWIQ CEDCLKWRKL  600
PASALLPSKW ICSDNSWDPE RSFCSAAQEL STEKLEELLS PSNSAAVQKM KAAKLEPDNV  660
EALEGLDTLA NLAILEEGEA SQAPGQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC  720
NVCLTVKRRF QTLMLRREKK QSEKEAETTR QRHQFQDEMF LDRSMDDESL TFSNTGPSKL  780
IVEGKMTDGS DEDPNRNKPS TSPFKGQIDL NMQPEREEEL SPGSDSGSMM KVLQDTGDRF  840
LEQQRSNSGG AGSSSSDPLE PGGEREHRVE NSSNVIDLGS SNLDADKDHP GTLSFNASAS  900
MSATG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-154	B3 family protein