PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517842.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 725aa MW: 79105.7 Da PI: 7.7669

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	153	254	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517842.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 244 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517842.1 245 GELRLGIRRA 254 999**996 PP
2	Auxin_resp	105.2	7.9e-35	280	360	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517842.1 280 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 360 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE 120 NEPIEHKMQE EMTNDSEGED FEGSEKTTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP 180 PLDYSQQRPS QELVAKDLLG IKWKFRHIYR GQPRRHLLTT GWSAFVNKKR LVSGDAVLFL 240 RGNDGELRLG IRRAAQLKSG SPFSNICSQQ LNSSSIMDVF NAISSKTSFS VYYNPRATSS 300 QFVLPFHKFL KSINHSFSAG MRFSLSFETD DAADRRCTGR ITGVGDVDPI RWPGSRWRSL 360 VVRWDDVETK RHGRVSPWEI EPSGSVSVAS NVVPPGLKRT RIGLSPTELE FPVPNGIGAS 420 DFGESLRFQK VLQGQEILGY STPIDGDDNI RHPPEKRRSF PGLLGSGIAL MRNGPRIPVT 480 NSETSSRGFM FDESFQFHKV LQGQEMYPSP FFGIATATNE VKASGGYGPV DSVPLSRSKD 540 GWPMTMQSEN FLTRSSIPSV QVSSPSSVFM FQQSMVPVPS FNSYNRGNFT EQRTMNKSTS 600 HNSGTAFMTD HNSSTEVPQG MRPTSLGVQK QLGLSHPSTT EPAFTGNKAG CRLFGFSLTE 660 GKNVGNTTDK ASPATTPINA GTTSVLSSNS GLRCPLKSPL MNKVVGSNCT KGAVQYHFAN 720 CSTYY

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEPIEHKMQE EMTNDSEGED FEGSEKTTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYSQQRPS QELVAKDLLG IKWKFRHIYR GQPRRHLLTT GWSAFVNKKR LVSGDAVLFL  240
RGNDGELRLG IRRAAQLKSG SPFSNICSQQ LNSSSIMDVF NAISSKTSFS VYYNPRATSS  300
QFVLPFHKFL KSINHSFSAG MRFSLSFETD DAADRRCTGR ITGVGDVDPI RWPGSRWRSL  360
VVRWDDVETK RHGRVSPWEI EPSGSVSVAS NVVPPGLKRT RIGLSPTELE FPVPNGIGAS  420
DFGESLRFQK VLQGQEILGY STPIDGDDNI RHPPEKRRSF PGLLGSGIAL MRNGPRIPVT  480
NSETSSRGFM FDESFQFHKV LQGQEMYPSP FFGIATATNE VKASGGYGPV DSVPLSRSKD  540
GWPMTMQSEN FLTRSSIPSV QVSSPSSVFM FQQSMVPVPS FNSYNRGNFT EQRTMNKSTS  600
HNSGTAFMTD HNSSTEVPQG MRPTSLGVQK QLGLSHPSTT EPAFTGNKAG CRLFGFSLTE  660
GKNVGNTTDK ASPATTPINA GTTSVLSSNS GLRCPLKSPL MNKVVGSNCT KGAVQYHFAN  720
CSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein