PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517845.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 723aa MW: 78850.4 Da PI: 7.5928

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	151	252	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517845.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 242 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517845.1 243 GELRLGIRRA 252 999**996 PP
2	Auxin_resp	105.2	7.9e-35	278	358	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517845.1 278 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 358 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE 120 PIEHKMQEEM TNDSEGEDFE GSEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYSQQRPSQE LVAKDLLGIK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG 240 NDGELRLGIR RAAQLKSGSP FSNICSQQLN SSSIMDVFNA ISSKTSFSVY YNPRATSSQF 300 VLPFHKFLKS INHSFSAGMR FSLSFETDDA ADRRCTGRIT GVGDVDPIRW PGSRWRSLVV 360 RWDDVETKRH GRVSPWEIEP SGSVSVASNV VPPGLKRTRI GLSPTELEFP VPNGIGASDF 420 GESLRFQKVL QGQEILGYST PIDGDDNIRH PPEKRRSFPG LLGSGIALMR NGPRIPVTNS 480 ETSSRGFMFD ESFQFHKVLQ GQEMYPSPFF GIATATNEVK ASGGYGPVDS VPLSRSKDGW 540 PMTMQSENFL TRSSIPSVQV SSPSSVFMFQ QSMVPVPSFN SYNRGNFTEQ RTMNKSTSHN 600 SGTAFMTDHN SSTEVPQGMR PTSLGVQKQL GLSHPSTTEP AFTGNKAGCR LFGFSLTEGK 660 NVGNTTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMN KVVGSNCTKG AVQYHFANCS 720 TYY

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
PIEHKMQEEM TNDSEGEDFE GSEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYSQQRPSQE LVAKDLLGIK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG  240
NDGELRLGIR RAAQLKSGSP FSNICSQQLN SSSIMDVFNA ISSKTSFSVY YNPRATSSQF  300
VLPFHKFLKS INHSFSAGMR FSLSFETDDA ADRRCTGRIT GVGDVDPIRW PGSRWRSLVV  360
RWDDVETKRH GRVSPWEIEP SGSVSVASNV VPPGLKRTRI GLSPTELEFP VPNGIGASDF  420
GESLRFQKVL QGQEILGYST PIDGDDNIRH PPEKRRSFPG LLGSGIALMR NGPRIPVTNS  480
ETSSRGFMFD ESFQFHKVLQ GQEMYPSPFF GIATATNEVK ASGGYGPVDS VPLSRSKDGW  540
PMTMQSENFL TRSSIPSVQV SSPSSVFMFQ QSMVPVPSFN SYNRGNFTEQ RTMNKSTSHN  600
SGTAFMTDHN SSTEVPQGMR PTSLGVQKQL GLSHPSTTEP AFTGNKAGCR LFGFSLTEGK  660
NVGNTTDKAS PATTPINAGT TSVLSSNSGL RCPLKSPLMN KVVGSNCTKG AVQYHFANCS  720
TYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein