PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518004.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 692aa MW: 79801.8 Da PI: 6.4114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++ +kk +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_023518004.1 68 EYYGNFARNNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPAKKKPIGEHHRDRKSVRCGCDAKMYLSKEVcegIAQWFVVQFSNVHNHELL 159 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MTSIPSKNVW IRRQQCPCGD WKCYVSYEGE GEETCVAAQL VKSERVSSEA MVAPYVGMVF 60 KTDNDAFEYY GNFARNNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAK KKPIGEHHRD 120 RKSVRCGCDA KMYLSKEVCE GIAQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIHGGQLP FLERDVRNFV QNRKKIVQEH DALLNEKREI 240 DTMELLEACK ATKESDEEFV YDFTVDSNDK VEHVAWSYGY SVNAYAMFGD VVYFDTTYSS 300 ITYGLLLGVW LGIDNHGRTI FFGCVLLQDE TSRSFAWALQ TFIRFMRGTF PQTILTDLDP 360 GLRDAIRTEL PATKHIIPKW NILSKVSSWF SLHLGSHYAE FKAEFDLLYS VESTEDFDIR 420 WGQMVSMFGL VSDKHIDLLF SFREYWVPSY IRGCLLAQMA TPAYFKSVDS FLKGVFNAQT 480 CLCSFFEKVG ISANFQGHEH QEMQYLQAKT NIPIEEHARS ILTPFAFNAL QHELVLAMQY 540 AASEMADGSY LVRHFKKMDG ECLVMWIAES EQIHCSCKEF ESSGLLCRHA LRIFIIKNYF 600 QLPDKYYLDR WRRQSSLGSS DGHGIQSNDG DWFHEYQHLT EALFAEASVT KERCEHVRKE 660 LMKELTRLLN EVRRMPDGDG TAAMDLTESP NG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MTSIPSKNVW IRRQQCPCGD WKCYVSYEGE GEETCVAAQL VKSERVSSEA MVAPYVGMVF  60
KTDNDAFEYY GNFARNNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAK KKPIGEHHRD  120
RKSVRCGCDA KMYLSKEVCE GIAQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIHGGQLP FLERDVRNFV QNRKKIVQEH DALLNEKREI  240
DTMELLEACK ATKESDEEFV YDFTVDSNDK VEHVAWSYGY SVNAYAMFGD VVYFDTTYSS  300
ITYGLLLGVW LGIDNHGRTI FFGCVLLQDE TSRSFAWALQ TFIRFMRGTF PQTILTDLDP  360
GLRDAIRTEL PATKHIIPKW NILSKVSSWF SLHLGSHYAE FKAEFDLLYS VESTEDFDIR  420
WGQMVSMFGL VSDKHIDLLF SFREYWVPSY IRGCLLAQMA TPAYFKSVDS FLKGVFNAQT  480
CLCSFFEKVG ISANFQGHEH QEMQYLQAKT NIPIEEHARS ILTPFAFNAL QHELVLAMQY  540
AASEMADGSY LVRHFKKMDG ECLVMWIAES EQIHCSCKEF ESSGLLCRHA LRIFIIKNYF  600
QLPDKYYLDR WRRQSSLGSS DGHGIQSNDG DWFHEYQHLT EALFAEASVT KERCEHVRKE  660
LMKELTRLLN EVRRMPDGDG TAAMDLTESP NG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein