PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518020.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 400aa MW: 45649.2 Da PI: 9.4905

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	278	325	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W+ I r++ +Rt+ +++++w+++l XP_023518020.1 278 WTLTEVMQLVDGIAEYGTGRWTHIKRHLFahsPHRTPIDLRDKWRNLL 325 ***************************9999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MIMEAEYNDT HVERGFTHDL CAGTNSSRVT PLEGSICDTI LDNRNIHKLV NLSSECKSQG 60 SSRSDTDAFG ISELSAAMIM ETEFNNTHVE RGFTHDLCAG LRTNSSRVTP HEGSICDTIL 120 DNRSIHKFNT NESFIENRDL SDENVKGDIV ASKLVSCSRE RRLRKPTRRF IEEFSDSKSE 180 SNKGRKKTPT KDKYMKGTST EESSHVSHEV QVSTPKSEWH CGTSVPVQSR SQRRHPKKHV 240 PVSGFLSEDV YSATECKNVY SSAKRCKKHD RRKHQKMWTL TEVMQLVDGI AEYGTGRWTH 300 IKRHLFAHSP HRTPIDLRDK WRNLLRASCV NIQNRKGIER KQSHASRPLP KSLLQRVYEL 360 ANIYPYPKER SPKSVEATTP APDLTESNAL PFNWGRKKDE

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MIMEAEYNDT HVERGFTHDL CAGTNSSRVT PLEGSICDTI LDNRNIHKLV NLSSECKSQG  60
SSRSDTDAFG ISELSAAMIM ETEFNNTHVE RGFTHDLCAG LRTNSSRVTP HEGSICDTIL  120
DNRSIHKFNT NESFIENRDL SDENVKGDIV ASKLVSCSRE RRLRKPTRRF IEEFSDSKSE  180
SNKGRKKTPT KDKYMKGTST EESSHVSHEV QVSTPKSEWH CGTSVPVQSR SQRRHPKKHV  240
PVSGFLSEDV YSATECKNVY SSAKRCKKHD RRKHQKMWTL TEVMQLVDGI AEYGTGRWTH  300
IKRHLFAHSP HRTPIDLRDK WRNLLRASCV NIQNRKGIER KQSHASRPLP KSLLQRVYEL  360
ANIYPYPKER SPKSVEATTP APDLTESNAL PFNWGRKKDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	ERRLRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-22	MYB_related family protein