PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518109.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24387.4 Da PI: 6.0483

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f+++qle Le+ F+++ ++ e++ +L+k++gL+ rq+ vWFqNrRa+ k XP_023518109.1 57 KKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSK 110 5678************************************************98 PP
2	HD-ZIP_I/II	108.1	6.3e-35	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+r+s++q+++LE+sF+ee kLeperK++l++e+glqprq+avWFqnrRAR k kql + y++Lk+++da++ e+ L+++v+eLr+ l+e XP_023518109.1 56 EKKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSKVKQLQHLYDTLKQEFDAISMEKLDLQQQVRELRSMLRE 148 69**************************************************************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MDSYNGSDLS PHYVPPPPQS SSALLYPCSL DQFPETTETK RLGMEAQESR VGGVDEKKKR 60 FSRDQLESLE RSFQEEVKLE PERKMKLSKE IGLQPRQIAV WFQNRRARSK VKQLQHLYDT 120 LKQEFDAISM EKLDLQQQVR ELRSMLREQA VRNHGSMAYM TVSEEEAAES TAEGVRSWNN 180 HIFNVENVEQ ISASSIPSPW SCSQVAHLPS YP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	86	KKKRFSRDQLESLERSFQEEVKLEPERKMK
2	105	113	RRARSKVKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-38	HD-ZIP family protein