PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518177.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 330aa MW: 37068.6 Da PI: 6.5025

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.8e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++++ g +W++++++ g+ R++k+c++rw +yl XP_023518177.1 14 RGLWSPEEDEKLIKCIRKIEGQaCWSRVPKMAGLDRCGKSCRLRWINYL 62 788***************99***********************97 PP
2	Myb_DNA-binding	51.2	2.8e-16	68	110	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ ++d+++ lG++ W+ Ia++++ gRt++++k++w+ XP_023518177.1 68 RGCFSAEEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEIKNFWN 110 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGHHSCCTKV KVKRGLWSPE EDEKLIKCIR KIEGQACWSR VPKMAGLDRC GKSCRLRWIN 60 YLRPDLKRGC FSAEEERTII DVHRILGNRW AQIAKHLPGR TDNEIKNFWN SSIKKKLLAL 120 GLDPNTHNLL PARHQQQQQQ QHHAAAAAAA ANHNNNNNMN AYNDHDQIIG DVVNGSYVYN 180 SNNYTLLEEE QQQQQQQQLQ TGSSCWGAPI VPGMMNWELF ESGCGIVTGS SGNNSLDCDL 240 DMMIERERLR RMWEDEEADV GALIMPLPTE EAAGSVVMQS QPQPQPHNNH TTTAAAAAAA 300 AEFKDLDFYF GESAVIPNPN PINFNSNLQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-69	MYB family protein