PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518267.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 310aa    MW: 36336.8 Da    PI: 6.7445
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++a+i+fss+gkl+ey+s
  XP_023518267.1 10 RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCS 59
                    8***********************************************96 PP
2K-box51.44.6e-18861711297
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++ e+l++ l+ ++k +++Lq ++ ++  edL++ +l++L ++e++L++sl+++R++K+e+l +q+e+l++kek+l++en+++ + 
  XP_023518267.1  86 NDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHL 171
                     5567777888899********************************************************************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCSQ  60
ATCSMDQIIR RYQIAIGNPI PDQNMNDPEE LERLLRIMRK DTDELQLSLQ RYTAEDLSTF  120
QLRDLDEIEN RLQTSLNRVR ARKSEVLQQQ VENLRRKEKM LEDENEQIYH LIREQQMAME  180
EQQEVAAAMM MQKRRSEEEE MRIRRPGDHQ NQNQNHHHHH HYHHHHHGVE DQAVVSMEGD  240
DDDHGDAFGF SNPHIIHPHL QLQLHPHDEP NSVLQLGGPL PPPPPPPFLH PYRLQPFQPN  300
LHSSTTYATP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-50MIKC_MADS family protein