PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518350.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27224.4 Da    PI: 7.0061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.9e-202068149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ien+  r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + +
  XP_023518350.1 20 KKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
                    68******************************************97776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MADGSTKIKQ TKGRQKIEMK KIENEDDRLI TFSKRRSGIY KKASELATLC GAEVGVVVFS  60
PAGKPFSFAH PCIESVANKF LDENPQPNDN THPLVEAHRR LRINELNQQH NQLLSQLDAE  120
KEKGKALEKL KKVRGNNGRG WWESPTEELG IDELQQVDGS LGELYQNVCH ELKERGVLGS  180
SSYSASNTLG FDHAGREETI PFNILATGAA AAAAGPSSAT YLPDPNPFDY GQQPQPHLPH  240
HHHHHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-34M-type_MADS family protein