PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518445.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 24865 Da PI: 7.6559

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	57	110	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_023518445.1 57 KRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110 56899***********************************************95 PP
2	HD-ZIP_I/II	120.4	9.4e-39	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d++ +n++Le e+++L e+l+e XP_023518445.1 56 KKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSIILQNSHLEYEMTKLSEQLRE 147 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MAAADDDNTL LISNLYSPGV YTQILPQQGA AEGNKPTKRR RRRSKAKEAA GAAGLKKRKL 60 STEQVKLLEM NFGDEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL 120 KKAHDSIILQ NSHLEYEMTK LSEQLREAKN EIQRLVEGSE KIWSNSPTSS ETMDAVPPPA 180 PSWGELFLGE YEDVFYCMQQ QHGNYSQGME WLNLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	KRRRRR
2	38	59	KRRRRRSKAKEAAGAAGLKKRK
3	39	60	KRRRRRSKAKEAAGAAGLKKRK
4	40	61	KRRRRRSKAKEAAGAAGLKKRK
5	41	62	KRRRRRSKAKEAAGAAGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	3e-54	HD-ZIP family protein