PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518498.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 236aa MW: 26491.9 Da PI: 9.8775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	26	69	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT d+++ +a + + + +W +Ia ++ g+++ ++++++ XP_023518498.1 26 PWTRHQDKIFEHALVMVPENspnRWMKIAGLVP-GKSAAEVRDHY 69 8****************9*********.********9 PP
2	Myb_DNA-binding	42.1	2e-13	117	162	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky XP_023518498.1 117 KPWTKKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKY 162 58***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MEAPSSSFGL LDHYWSPTTS IPSPTPWTRH QDKIFEHALV MVPENSPNRW MKIAGLVPGK 60 SAAEVRDHYD ALVSDVQKID SGRVELPNYA DESLSSSPER ESPCQLPEKA SERKKGKPWT 120 KKEHQLFLLG LKKFGKGDWR SISRNVVITR TPTQVASHAQ KYFLRQESAK KDRKRSSIHD 180 ITTVEGNLVT AVAATSQGQL SIFSLTHSPS PSFPLPLPHQ FSPASYFPNQ RSLLDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-56	MYB family protein