PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518503.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LSD

Protein Properties

Length: 171aa MW: 18021.9 Da PI: 8.6134

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	31.2	3.8e-10	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+g r +L YP GA++V+CalC+tV XP_023518503.1 7 CSGYRSILLYPGGATNVCCALCNTV 31 88889*******************9 PP
2	zf-LSD1	44	3.6e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y rGA+sVRC++C+tV XP_023518503.1 46 CRGCRTLLMYARGATSVRCSCCHTV 70 9***********************9 PP
3	zf-LSD1	42.3	1.2e-13	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_023518503.1 84 CGNCRTTLIFPYGAPSVKCAICHYV 108 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MQSQLVCSGY RSILLYPGGA TNVCCALCNT VTSVPPPGTD MAQLICRGCR TLLMYARGAT 60 SVRCSCCHTV NLAPATNQVA HVNCGNCRTT LIFPYGAPSV KCAICHYVTN VGMSNVRVPI 120 PVHRRNGTIS SGMPPASSSQ SQTVVVENPM SVDESGKLVS NLVVGVTTDK R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-69	LSD family protein