PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518518.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 329aa MW: 36228.2 Da PI: 6.6634

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	165	184	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023518518.1 165 FSCPVCFKTFNRYNNMQMHM 184 89*****************9 PP
2	zf-C2H2	15.7	4.4e-05	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F + + ++H +++ XP_023518518.1 249 FTCRKCGKAFAVRGDWRTHEKNC 271 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MADPYSNSLA SLLKFSSLHH HFPQSQPSPS PSHLNMSLNC LPYPYLGSGS GSGSGSGSGS 60 GSPPPSSPPL REALPLLGLI SPPEQRQEQE EEDYGGDDEG NDESVTVALH IGLPSPSTVE 120 MGSSEIDHSN NNDNLDDFGQ STKTLIKGQY WIPTPTQILI GPTQFSCPVC FKTFNRYNNM 180 QMHMWGHGSQ YRKGPESLRG TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY 240 KRKHGLKPFT CRKCGKAFAV RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHVKAFGNDH 300 AAYGVGGVDG FGDEEEDDPA SEVEQDNNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-124	C2H2 family protein