PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518569.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 349aa MW: 38415.8 Da PI: 8.5549

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	97	146	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023518569.1 97 SQYRGVTCYRRTGRWESHIWD------NgKQVYLGGFDTAHSAARAYDRAAIKFRG 146 78**99999******......44**********************997 PP
2	AP2	42	2.3e-13	189	239	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_023518569.1 189 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAIKHNG 239 89******.7**5553..2.26******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MLDLNLCILS GDSASGSGSG SGSADHSNTT ADEDFSSNVN SGFTFSFSIL NNNGTENQLD 60 RTALFHPVAG VCSQRKWLDQ SVNPVKKGRR GPKSRSSQYR GVTCYRRTGR WESHIWDNGK 120 QVYLGGFDTA HSAARAYDRA AIKFRGVHAD INFDIGDYRE EIKEMRNLSK EEFVHILRRQ 180 SNGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DSEVEAARAY DKAAIKHNGR 240 EAVTNFDQSC YYGMEIAFES ESHGDIDLSL GIAPPCPPEH QTDNRSWPIP TPYGGASSLP 300 FFSAPAASSG FPSSPALPPP SPHRLLPPSP FLRYHIPPSI PAASNSLLL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MLDLNLCILS GDSASGSGSG SGSADHSNTT ADEDFSSNVN SGFTFSFSIL NNNGTENQLD  60
RTALFHPVAG VCSQRKWLDQ SVNPVKKGRR GPKSRSSQYR GVTCYRRTGR WESHIWDNGK  120
QVYLGGFDTA HSAARAYDRA AIKFRGVHAD INFDIGDYRE EIKEMRNLSK EEFVHILRRQ  180
SNGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DSEVEAARAY DKAAIKHNGR  240
EAVTNFDQSC YYGMEIAFES ESHGDIDLSL GIAPPCPPEH QTDNRSWPIP TPYGGASSLP  300
FFSAPAASSG FPSSPALPPP SPHRLLPPSP FLRYHIPPSI PAASNSLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-91	AP2 family protein