PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518846.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family Trihelix
Protein Properties Length: 295aa    MW: 33385.2 Da    PI: 5.0431
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.1e-1724114186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li++  ++  +l+rg+l++++W++v++++     ++++ +r+ +qCk++++ ++k+yk++k++ +  +   +s++p++d+l+
  XP_023518846.1  24 CWSQEATSTLIDFWGRRFVELNRGNLRQKDWQDVAEAVnalhgHSKKTHRTDVQCKNRIDTIKKKYKNEKARVSASNGSLTSSWPFYDRLD 114
                     7******************************************9***************************999887777789******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGDMTDSLTP SSGHSRPIPV REDCWSQEAT STLIDFWGRR FVELNRGNLR QKDWQDVAEA  60
VNALHGHSKK THRTDVQCKN RIDTIKKKYK NEKARVSASN GSLTSSWPFY DRLDVLIGSN  120
VSLKKPSTSM SPSPPMVRPL SYRKAPPSGT ANAVSVAIPQ KRPLAVVDGG HFRRNYSAMA  180
AAAAATEAEE EEEEEEEEEE EEEEAEADAE ERGIEEEEEG EGGGMRRLAE AIERFGKMYE  240
RVEAEKLRQM VELEKQRMQF AKDLEVQRMQ MFTETQVQLE RIKRGKKSGS NDIYG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.18e-41Trihelix family protein