PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519055.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 230aa MW: 26938.5 Da PI: 6.9501

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_023519055.1 31 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 78 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.4e-17	84	129	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+ E+ l++d++ ++G++ W++Iar+++ gRt++++k++w++++ XP_023519055.1 84 RGKITPHEERLILDLHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTHM 129 8999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MPLLHTQIPP SLTTRKRKKQ RMVLQEESMR KGPWTEQEDF QLVCFVGLFG DRRWDFIAKV 60 SGLKRTGKSC RLRWVNYLHP GLKRGKITPH EERLILDLHS KWGNRWSRIA RKLPGRTDNE 120 IKNFWRTHMR KVAKAAGHDH VVVSPSSSAQ IIEIGEELLD HREEEDGYSM DDIWRDIDDQ 180 SNVINQVCDQ SNFECGPMSM PPWDYEEYSP WTVVEEENKV FDYGEGVALS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	19	RKRKK
2	15	21	RKRKKQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	9e-75	MYB family protein