PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519112.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19945 Da    PI: 5.5473
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF633.4e-201157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +++   rqvtfskRrng++KKA+ L +LC+ e+a+i+fs+ gk + +
  XP_023519112.1 11 VKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSF 57
                    677889************************************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGRRKIEMKM VKDRGSRQVT FSKRRNGLFK KANDLATLCG LEIAIIVFSP GGKAFSFGNP  60
NVEDVVDRYL NRKSEPIPPA SEGMFEKENE ELIDLVKQLQ LEKKKGEMLE KEMKSRGESI  120
KIEDLDLDEL LKLKESLESL RQNVRMKESE LEASSSLLLL ANEPVVEADA SASKTSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-31M-type_MADS family protein