PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519123.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LSD

Protein Properties

Length: 131aa MW: 14289.4 Da PI: 6.2157

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	29.7	1.1e-09	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA++V+C++C tV XP_023519123.1 42 CGTCRRLLKYLKGARYVQCSCCSTV 66 ***********************99 PP
2	zf-LSD1	38	2.6e-12	80	104	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V XP_023519123.1 80 CGSCAVLLMYPYGASSVRCSSCTCV 104 **********************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence
MEIHEIEKDE DDGPPPGWEP ITPPLPQPPP QPLSSDMAQM VCGTCRRLLK YLKGARYVQC 60 SCCSTVNYVL EAHEVGQVKC GSCAVLLMYP YGASSVRCSS CTCVTEIGVH NRRPPWSVQQ 120 GQAAPPTNSV Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-33	LSD family protein