PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519464.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 359aa    MW: 40798 Da    PI: 5.8572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.3e-221053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++  rqvtfskR+ngi+KKA+EL +LCd+++ +++fs+tgk
  XP_023519464.1 10 KLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGK 53
                    5688999************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGRVKLKIKK LESTGSRQVT FSKRKNGIMK KAKELAILCD IDIVLLMFSP TGKPTLYQGE  60
RSSIEEVITK FAELTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDFEQELIN  120
EVTVLRDQIG EAHKRLSYWR NPDSISNIQQ LQQMEGLIRE SLNQTRLHKE NLRRHQLLSQ  180
EFTGQYPGGE MSLPLLMDEM QGIQPLLWLP NYGTQQITLQ NEPNFLQPGD VECSFPSYPS  240
YYNPGKQIEA GVSGQVDSMP QGDGGLNELS GTSCSTLQLG EQYQYPPTCD GSSFQDEKRL  300
NLEMEMNLHG NYVDNQLNGK LDLSRSLYDD EQHPWGSIPG PCSIPMYQSS NAYHHHQPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-90M-type_MADS family protein