PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519658.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 328aa MW: 36592.1 Da PI: 4.3596

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	100	153	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k XP_023519658.1 100 KKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 153 56689************************************************9 PP
2	HD-ZIP_I/II	132.2	1.9e-42	99	190	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls++qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk++ e+L ke+++L++e+ XP_023519658.1 99 EKKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGNLKADYENLLKEKDSLKAEIV 190 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MAGRRVYGGG DDGGSISGVS SNHSVLLQNR GGSFASEPLS ALFLSGSSSS TSPSLLGSRS 60 MMSFEDIRGG NGSNQSFFCP LDNEDNGDED LDDYFHHPEK KRRLSADQVR FLEKSFETEN 120 KLEPERKVQL AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YEALQSSYGN LKADYENLLK 180 EKDSLKAEIV VLTDKLILKD KERSNSVVSE DDKFGEEPPQ NLVDEASKSS KLGCKQEDMS 240 SVKSDIFDSD SPHYTDGVHS SLLDPGDSSY IFDPDQSDLS QDEEDNLGKN LLPPCIFPKL 300 EDVDYSDPPT SSCNFVFPIE DNALWSWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-45	HD-ZIP family protein