PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519703.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 469aa MW: 51838.1 Da PI: 4.5957

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519703.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.6e-12	135	157	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G+ CkF+H+ XP_023519703.1 135 EDCAFYLKTGTCKFGSFCKFNHP 157 89********************9 PP
2	zf-CCCH	30.2	7.7e-10	182	203	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C+f++rtG Ck+Gd C+++H XP_023519703.1 182 TECKFYLRTGGCKFGDACRYNH 203 68******************** PP
3	zf-CCCH	43.2	6.3e-14	226	250	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG CkyG++CkF+H+ XP_023519703.1 226 DEKECPFYMRTGSCKYGANCKFNHP 250 6789********************9 PP
4	zf-CCCH	23.4	1.1e-07	351	377	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ Ck++H++ XP_023519703.1 351 PGQPECSYFLKTGDCKFKTLCKYHHPK 377 5789*********************96 PP
5	zf-CCCH	36.6	7.4e-12	399	423	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++r+G+Ck+G++CkF H++ XP_023519703.1 399 QNICTYYSRYGICKFGPSCKFDHPM 423 679********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEPSEAVSVP NHCEESASEF QSSSQFRSSV LDPVATDDRI HAELQELDLK DEKEETVKDF 60 DDGGEWEVEK NPDEGEGNDA KKIGESDRDR SVRNDDGDDD DDEEVDAADG DGGEVENIGD 120 WRGKNNQYPV RPEAEDCAFY LKTGTCKFGS FCKFNHPLRK KNQVVSEKLK YEDDSARLAG 180 KTECKFYLRT GGCKFGDACR YNHTRPKALA SSILELNFLG LPIRPDEKEC PFYMRTGSCK 240 YGANCKFNHP DPTTVAVPES PSGYNNGVPL QGGSQSHIPS WNSPRVLNEA TAFVPAVISP 300 SPDSEWNGYQ APVYPSEISV LPPPTYVVNN IASETDIYPC HQQAEEYPER PGQPECSYFL 360 KTGDCKFKTL CKYHHPKNRN PKLPACTLND KGLPLRPDQN ICTYYSRYGI CKFGPSCKFD 420 HPMLPASSTV GVGVGELEQQ PRYGNFSAAE GAEMAGGGSR NSPTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEPSEAVSVP NHCEESASEF QSSSQFRSSV LDPVATDDRI HAELQELDLK DEKEETVKDF  60
DDGGEWEVEK NPDEGEGNDA KKIGESDRDR SVRNDDGDDD DDEEVDAADG DGGEVENIGD  120
WRGKNNQYPV RPEAEDCAFY LKTGTCKFGS FCKFNHPLRK KNQVVSEKLK YEDDSARLAG  180
KTECKFYLRT GGCKFGDACR YNHTRPKALA SSILELNFLG LPIRPDEKEC PFYMRTGSCK  240
YGANCKFNHP DPTTVAVPES PSGYNNGVPL QGGSQSHIPS WNSPRVLNEA TAFVPAVISP  300
SPDSEWNGYQ APVYPSEISV LPPPTYVVNN IASETDIYPC HQQAEEYPER PGQPECSYFL  360
KTGDCKFKTL CKYHHPKNRN PKLPACTLND KGLPLRPDQN ICTYYSRYGI CKFGPSCKFD  420
HPMLPASSTV GVGVGELEQQ PRYGNFSAAE GAEMAGGGSR NSPTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-130	C3H family protein