PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519816.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 465aa MW: 51909 Da PI: 8.5377

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.3e-08	342	390	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +l+++v ++G g+W+ I r +Rt ++k++w+++l XP_023519816.1 342 SWTLSEVMKLIEGVSEYGVGRWTEIKRLQFsssSHRTSVDLKDKWRNLL 390 5**********************876558999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSFLIVLDFN TFHSHKCLGI EHFSFAVDFD HIKIDSESLH SSLTLEGERT KQEDHDGKLH 60 GADDVCSGSN KLLGTANSRT TDDIFNLAPG SSNASFLGNV DFGSYSQGFC TTDIGVDLSF 120 TGGHNVAFDQ KEGKLMISSS TGSSGCSGSA TACLDDENMS DNRPVKRKRL SSCSSSKTNS 180 EHNESRIVLF NEGSRGDTLV TEKRLRKPPR RYSEESVEQK SRSNSKKSAP RASKDKSRHS 240 ESHKQQWQKK LKAAPVVYKD KSFNGGCIQV PFGLPIEESH SAKKIICWEP EEIKENRILC 300 IKDKNDVESF SAESEDENTE DECATKVYNA QKGNSRRKHH ISWTLSEVMK LIEGVSEYGV 360 GRWTEIKRLQ FSSSSHRTSV DLKDKWRNLL KASDTQLQNR RKQVVVGRKQ TSQQVPESVL 420 CRVRELAAIY PYPRENKSKN LCSAPSSSSF KSTANNMLIS LPTVM

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSFLIVLDFN TFHSHKCLGI EHFSFAVDFD HIKIDSESLH SSLTLEGERT KQEDHDGKLH  60
GADDVCSGSN KLLGTANSRT TDDIFNLAPG SSNASFLGNV DFGSYSQGFC TTDIGVDLSF  120
TGGHNVAFDQ KEGKLMISSS TGSSGCSGSA TACLDDENMS DNRPVKRKRL SSCSSSKTNS  180
EHNESRIVLF NEGSRGDTLV TEKRLRKPPR RYSEESVEQK SRSNSKKSAP RASKDKSRHS  240
ESHKQQWQKK LKAAPVVYKD KSFNGGCIQV PFGLPIEESH SAKKIICWEP EEIKENRILC  300
IKDKNDVESF SAESEDENTE DECATKVYNA QKGNSRRKHH ISWTLSEVMK LIEGVSEYGV  360
GRWTEIKRLQ FSSSSHRTSV DLKDKWRNLL KASDTQLQNR RKQVVVGRKQ TSQQVPESVL  420
CRVRELAAIY PYPRENKSKN LCSAPSSSSF KSTANNMLIS LPTVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-31	MYB_related family protein