PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519889.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 709aa    MW: 78653.1 Da    PI: 6.7878
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-202680256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +  +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_023519889.1 26 KCYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 80
                    667899**********************************************998 PP
2START1693.1e-532234462205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a++el+++ + +ep+W ks     + ++ +++ q f++ ++      +++ea r+sgvv+m+++ lv  ++d++ +W+e ++     a t+
  XP_023519889.1 223 IATNAMAELLRLSQTNEPFWIKSTndgrDVLDLETYEQAFPRPNSpfknphFRTEATRDSGVVIMNSEALVDMFMDSN-KWTELFPtivsIARTI 316
                     77899*******************8888888888888888887779********************************.*******999999*** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evissg      g lqlm++elq+lsplv+ R f+++R+++q + g+w++vdvS + +++++   s   +++lpSg+li++++ng+skvtw+ehv
  XP_023519889.1 317 EVISSGllgtqnGSLQLMYQELQLLSPLVStRHFYILRFCQQIEHGTWAVVDVSYNIPRENQI-VSHSQCHRLPSGCLIQDMPNGYSKVTWIEHV 410
                     *************************************************************95.778889************************* PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     ++++r   hwl r l++sgla+ga +w+atlqr  e
  XP_023519889.1 411 EVEDRGSsHWLCRDLIHSGLAFGAERWLATLQRMSE 446
                     ****9888************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MEFGTGGGGG SGWDNDSSSD PQRRKKCYHR HTANQIQRLE AMFKECPHPD EKQRLQLSRE  60
LGLAPRQIKF WFQNRRTQMK AQHERADNSA LRAENDKIRC ENIAIREALK NVICPSCGGP  120
PLQDPYFDEH KLRIENAHLK EELDRVSSIA AKFIGRPISQ LPPIHPPHFS SLELSMASFP  180
SQEIGCPSLD LDLLPASSTS VPTLPYHHPI HLSAVDKSLM TEIATNAMAE LLRLSQTNEP  240
FWIKSTNDGR DVLDLETYEQ AFPRPNSPFK NPHFRTEATR DSGVVIMNSE ALVDMFMDSN  300
KWTELFPTIV SIARTIEVIS SGLLGTQNGS LQLMYQELQL LSPLVSTRHF YILRFCQQIE  360
HGTWAVVDVS YNIPRENQIV SHSQCHRLPS GCLIQDMPNG YSKVTWIEHV EVEDRGSSHW  420
LCRDLIHSGL AFGAERWLAT LQRMSERLAC LMMTGSSSQD LGGVIPSSEG KRSMMKLAQR  480
MVNNFCASIS SSHGHRWTTL SGMNEVGVRV TVHKSMDPGQ PNGVVLSAAT TIWLSVSPQT  540
IFNFFKNDRT RSQWDVLSDG NPVQEVAHIT NGSHPGNAIS VLRAFNTSQN NMLILQESCI  600
DSSGSLVVYC PVDLPAMNVV MSGEDPSSIP LLPSGFTILP DGRRDQGEGT SSSLDVHSRS  660
GGSLLTVAFQ ILVSSLPSGK LNLESVTTVN NLISTTLHQI KTALNCHSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein