PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519924.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 345aa MW: 38890.2 Da PI: 6.5047

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl XP_023519924.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.4	3.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_023519924.1 67 RGMFSQQEQDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEQDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG 120 IDPNTHKPII NIHEIKEKKI FEDKEFAEIP PVEGLGSGIS AVNNQGPAFL LGGVDYYDGG 180 VTAAPIRDHF MNKQPLDSLC YFEFQTGFDP YNLSDTNSNF GFSSMPSLTN SDHGSLSGTE 240 FSDNSGSNMS NYGGFYMNNN SNNNGVDNST FCSWESENKS DIFFQNHVNN NNTNNNNNHH 300 NNNGIKSEEL NPSSSVLDGQ LIQSYPLTSL SQDIVRCNFD AFYHL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEQDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG  120
IDPNTHKPII NIHEIKEKKI FEDKEFAEIP PVEGLGSGIS AVNNQGPAFL LGGVDYYDGG  180
VTAAPIRDHF MNKQPLDSLC YFEFQTGFDP YNLSDTNSNF GFSSMPSLTN SDHGSLSGTE  240
FSDNSGSNMS NYGGFYMNNN SNNNGVDNST FCSWESENKS DIFFQNHVNN NNTNNNNNHH  300
NNNGIKSEEL NPSSSVLDGQ LIQSYPLTSL SQDIVRCNFD AFYHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	3e-77	MYB family protein