PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519943.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 555aa    MW: 62732.1 Da    PI: 6.3776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.2e-16411191297
                     HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++  + +p  fa++  +++   +k+++led+ g++W+v++  +++ g+  +++GW+ F +++ L+ gDfv+F ++   + +++v+++
  XP_023519943.1  41 SE-VVFFPPIFASTVsKLV---NKKVVLEDSLGQQWKVTV--SNCEGSLAFQEGWSAFSSEHSLEIGDFVIFNHIM--DLHFNVSIY 119
                     43.3778999998885444...568***************..*******************************775..454577776 PP
2B344.23.4e-144695511697
                     EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     l lp +f   +    +++e++k + l+d+s r W + +     ++  vlt+GW+ F+ an++k+gD ++F+++++ e+e++v+++
  XP_023519943.1 469 LELPMTFHLPCsrgRKNPENKKVVFLRDPSKRLWPILY--HEMPNVQVLTSGWEAFCCANRIKSGDECLFHVKDDLEREYNVSIR 551
                     5566666333344466777888999*************..9******************************99998888999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    
MSSKVEACPE CTQRCLRFHR KTGNSSSVTS FFKVMFGDRF SEVVFFPPIF ASTVSKLVNK  60
KVVLEDSLGQ QWKVTVSNCE GSLAFQEGWS AFSSEHSLEI GDFVIFNHIM DLHFNVSIYT  120
KTGCEKVWFA EKSYTRKRIR STCPVLEITN EGLSNPQASR PSVGSGSNVT LSQDKFHVAG  180
YRNMNVYQGK RQKYQSNDEW HGPLDIVDDL YCLIDRNKDV GPEENRSPLF NLFSMEMQMV  240
NSCINENSTN KAAQDEINPN CASSSPNTII SVGPVNSVPV DIRGDMEVLP SNVSANKIND  300
KRQCFEEADI KMSVSDKDPC HDRTIEVPFI SSATNSDRNG EPFCDMPLKI IRDYQNVPAM  360
CNTVSTITRH DQGSSVKQEY PPNSLKVKKC LHGDEKKIIK MEPLEIKTEV NNCGDFIEQI  420
LEPKVIKEEF LETSNQSGRE INDTTDNADP IGTPARISCV VAKDTLSFLE LPMTFHLPCS  480
RGRKNPENKK VVFLRDPSKR LWPILYHEMP NVQVLTSGWE AFCCANRIKS GDECLFHVKD  540
DLEREYNVSI RKCKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-13B3 family protein