PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519981.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 729aa    MW: 80972.9 Da    PI: 6.0745
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1964119156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  XP_023519981.1  64 RKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLK 119
                     789999**********************************************9877 PP
2START185.82.3e-582494681206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el ++a a+ep+Wv      e++n+de+l++ +++ +      s ea+r++ +v  ++ +lv +l+d++ qW++ +     +a tle
  XP_023519981.1 249 ELAVSAMEELCRMAHAGEPLWVPGEnsmEMLNEDEYLRTYSTGIGprilgLSLEASRETSIVAFNHLKLVDILMDVN-QWSNIFCgivsRALTLE 342
                     57899*****************888888************99999********************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      gal++m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+d  ++ p+     R +++pSg+li++++ng+sk+ wvehv+
  XP_023519981.1 343 VLSTGvggnynGALHVMTAEFQVPSPLVPtRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPT----SRTRRRPSGCLIQELPNGYSKIMWVEHVE 433
                     ***********************************************************995....78889************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l++++v  gla+gak+wvatl+rqc++
  XP_023519981.1 434 VDDRAVHNLYKRVVTCGLAFGAKRWVATLDRQCQR 468
                     *********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MLGGHDYEEH HDEEDVVLLE MTQKNFETEL EKFGEDDQLE SSSRSVKDAA MGEDPFLHNH  60
TNKRKRYHRH TQLQIQEMEA FFKECPHPDD KQRKELSREL GLDPLQVKFW FQNKRTQLKA  120
QHERHENAIL KAQNEKLRAE NMRYKEALSN TSCPNCGGPA ALGEMSFDDQ HLRIDNAQLR  180
DEIERLNSVA SKFAGKPWAS HSRIPPCALD LGVGRALQPP QAEFLGEIYG VGDMLKSVTT  240
EIDKPVIVEL AVSAMEELCR MAHAGEPLWV PGENSMEMLN EDEYLRTYST GIGPRILGLS  300
LEASRETSIV AFNHLKLVDI LMDVNQWSNI FCGIVSRALT LEVLSTGVGG NYNGALHVMT  360
AEFQVPSPLV PTRENYFVRY CKQQTDRSWA VVDVSLDYLR PTPTSRTRRR PSGCLIQELP  420
NGYSKIMWVE HVEVDDRAVH NLYKRVVTCG LAFGAKRWVA TLDRQCQRLT NSSAANIPAV  480
DICVVTGQEG RRSVMKLAER MVRSFCSGVG AASAHNWTTL STIDSDHVRV MARKSLDDPG  540
RPPGIVLNAA TSFWIPIPPN RVFHFLRDQN TRSQWDVLSN GGLVQEMARI GNDRNPGNCV  600
SLLRVNSTNS SQSNMLILQE SCSDISGCYI TYAPVDTVAM NMVLSGGDPD YVALLPSGFA  660
ILPDGPSGPD APAGILEFGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI  720
RAAVMCEHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein