PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519986.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 23097.6 Da PI: 10.8656

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gk y +ss XP_023519986.1 9 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSS 59 79***********************************************96 PP
2	K-box	67.2	5.8e-23	84	169	13	98
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a ++ e++ +k+ i +L +R++ GedL+ LslkeL+qLe+q+ +++++RskK ++ e+i++l++k k lqee+ +L+k+l XP_023519986.1 84 RALVWKSEMEDMKRSIISLDARLRNFAGEDLGLLSLKELKQLERQMSIGIERVRSKKRRITSEHINQLKRKYKGLQEEHSRLQKRL 169 456799*****************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MGRGKVQLKR IENPTSRQVT FSKRRNGLLK KAYELSVLCD AEVALLIFSP SGKAYQFSSH 60 DMDGTLARYR SDVGLPQSNH PHSRALVWKS EMEDMKRSII SLDARLRNFA GEDLGLLSLK 120 ELKQLERQMS IGIERVRSKK RRITSEHINQ LKRKYKGLQE EHSRLQKRLN QLKDVAVTTS 180 RISDANAFSA LDMAFQVNGL QN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-39	MIKC_MADS family protein