PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520149.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 284aa    MW: 32432.9 Da    PI: 5.3678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+  +  +  g+W++ a++ g++Rt+k+c++rw++yl
   XP_023520149.1 23 RGPWTVEEDNLLITSISIHSEGRWNLLAKRSGLRRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_023520149.1  76 RGNLSPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MSSCSEIEDE NNNNNNEEEE LRRGPWTVEE DNLLITSISI HSEGRWNLLA KRSGLRRTGK  60
SCRLRWLNYL KPDVKRGNLS PQEQLLILDL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQARHLNM DTDSDAFQQI IRYYWMPRLI QKINQSSPLP PQPPPPPPSE LPGTSQAEMV  180
SQSSYGFEAP ATATPLQIGG DLMGSSCNSS SSSSSGFQNY ENYGSFVNDY WDEEHGKGEM  240
MNWATTAVTG DSGYPVAHCH MAETNWTHTD FTGYVPSMDE LWQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-73MYB family protein