PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520185.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 421aa    MW: 47677.7 Da    PI: 6.5981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-202680256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +  +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_023520185.1 26 KCYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 80
                    667899**********************************************998 PP
2START138.85.5e-442234162176
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a++el+++ + +ep+W ks     + ++ +++ q f++ ++      +++ea r+sgvv+m+++ lv  ++d++ +W+e ++     a t+
  XP_023520185.1 223 IATNAMAELLRLSQTNEPFWIKSTndgrDVLDLETYEQAFPRPNSpfknphFRTEATRDSGVVIMNSEALVDMFMDSN-KWTELFPtivsIARTI 316
                     77899*******************8888888888888888887779********************************.*******999999*** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evissg      g lqlm++elq+lsplv+ R f+++R+++q + g+w++vdvS + +++++   s   +++lpSg+li++++ng+skvtw+ehv
  XP_023520185.1 317 EVISSGllgtqnGSLQLMYQELQLLSPLVStRHFYILRFCQQIEHGTWAVVDVSYNIPRENQI-VSHSQCHRLPSGCLIQDMPNGYSKVTWIEHV 410
                     *************************************************************95.778889************************* PP

                     E--SSX CS
           START 171 dlkgrl 176
                     ++++r 
  XP_023520185.1 411 EVEDRG 416
                     **9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MEFGTGGGGG SGWDNDSSSD PQRRKKCYHR HTANQIQRLE AMFKECPHPD EKQRLQLSRE  60
LGLAPRQIKF WFQNRRTQMK AQHERADNSA LRAENDKIRC ENIAIREALK NVICPSCGGP  120
PLQDPYFDEH KLRIENAHLK EELDRVSSIA AKFIGRPISQ LPPIHPPHFS SLELSMASFP  180
SQEIGCPSLD LDLLPASSTS VPTLPYHHPI HLSAVDKSLM TEIATNAMAE LLRLSQTNEP  240
FWIKSTNDGR DVLDLETYEQ AFPRPNSPFK NPHFRTEATR DSGVVIMNSE ALVDMFMDSN  300
KWTELFPTIV SIARTIEVIS SGLLGTQNGS LQLMYQELQL LSPLVSTRHF YILRFCQQIE  360
HGTWAVVDVS YNIPRENQIV SHSQCHRLPS GCLIQDMPNG YSKVTWIEHV EVEDRGSSHX  420
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-180HD-ZIP family protein