PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520234.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24699.6 Da    PI: 7.2945
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520234.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.1e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+  r+ tf kR++g++KK  EL +LC++e++ iifs+
  XP_023520234.1 11 ITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSP 50
                    899************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTRKKVKLTY ITNDAARKAT FKKRKKGLMK KLTELTTLCG IEACAIIFSP FNSQPDLWPS  60
IVGLERVLAK FKSLSEMEQC NKMVNQETFL RDRIAKATDQ LKKLQRENRE KEITRLMFES  120
LVAGATPPRD LNIIDLYDLV WLVDETMTDV CKRIELLTTT MTEPPVVSAV EPSWFMEMMS  180
HGAYDDQMGF KIWDDVIQLP NDDNHGAFWS NNGSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYITNDAARKATFKKRK
21732RKATFKKRKKGLMKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-48M-type_MADS family protein