PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520293.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 258aa    MW: 29188.7 Da    PI: 8.5464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++  +G+  +W + +++ g++R++k+c++rw++yl
   XP_023520293.1 14 KGPWSPEEDAKLKAYIINHGTAgNWISLPQKAGLNRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP
2Myb_DNA-binding40.47e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
   XP_023520293.1  69 GGFTDEEDRIICTLFSTIGSR-WSIIASQLP-GRTDNDIKNHWNS 111
                      569******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRSPCCDKA IVKKGPWSPE EDAKLKAYII NHGTAGNWIS LPQKAGLNRC GKSCRLRWLN  60
YLRPNIKHGG FTDEEDRIIC TLFSTIGSRW SIIASQLPGR TDNDIKNHWN SKLKRKLIAM  120
EKKAQMGTMP SFHNHHQISS FPSQQLYQDS NFSSFETLIS SIPSNWSNIQ TKETNSNSLM  180
NNSLMYNNNN PMVKQSSLGF GSEGSTCDGS YNQITPSGIM GFDQNHNYYY DLMNYQSQCC  240
INGEAAQEHL GPNSFYQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-73MYB family protein