PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520349.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 329aa    MW: 37325.9 Da    PI: 8.3177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-182773148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+++vkq+G + W+ Ia ++  gR +kqc++rw+++l
   XP_023520349.1 27 KGQWTEEEDRKLIRLVKQYGVRKWAQIADKLE-GRAGKQCRERWHNHL 73
                     799*****************************.*************97 PP
2Myb_DNA-binding49.21.2e-1579121145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+
   XP_023520349.1  79 KESWSEEEEMILVETHARVGNR-WAEIAKSIP-GRTENAIKNHWN 121
                      578*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MITPNHERKI CSKLKKSKKP SSAILIKGQW TEEEDRKLIR LVKQYGVRKW AQIADKLEGR  60
AGKQCRERWH NHLRPDIKKE SWSEEEEMIL VETHARVGNR WAEIAKSIPG RTENAIKNHW  120
NATKRRQNSR RKNKRPNSQN GKPHSSILQD YIKTKYNSTA VPATSTVTSA VSNDPSSHFN  180
HFFSESSDST SNLSSAIISS PMYDDELLFM QNFFSNSDGL LPSVDDGASM VVRNQSVAEF  240
GCVDSEPKAE KGKMVNGSNM VKSSHLYSDM YMSYLLNGTM NSGSGDGEIQ KTVEMAELQV  300
AAGEGQWENS EEEKREMDLM EMMSFHCYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124135KRRQNSRRKNKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-64MYB family protein