PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520360.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 515aa MW: 56715.1 Da PI: 6.0314

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	330	372	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_023520360.1 330 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 372 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MLSRAGNVLW MEEDSKEEDS ASWTKNNTDT HLTHPANSSV FDNNHQITSL STFKSMLDVE 60 DDWCINGNAL HNHTHHADIN DITFSQNFTD PPDNLLLPSA DSSSSCSPSS SVFNNIDPSQ 120 LRFFLPPTRT FSSLHKPISN NPLDHPFDLG AEFGFLDVQA SNSSTLLNNG ENCSGLAGFQ 180 SFDDNLGNAL LLNRSKLLRP LESFPSVGAQ PTLFQKRAAL RKSLADKGSN LGGLSPDGGW 240 FSNRIDGGVG KTEMGDENGK KRKMIYADEF QDTSIDTSRF NYDSDDFTEH NNSKLDESGR 300 NVGNTSNANS TVTGGDQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS 360 ILGDAIEYLK ELLQRINDLH NELEFAPPGT ALTPSTSFHP LTPTPSSLSS RIKEELCPSS 420 FPSPNGQQPA RVEVRVRQGR AVNIHMFCSR RPGLLLSTVR ALDNLGLDIQ QAVISCFNGF 480 AMDIFRAEQC SEEQDVHPEQ IKAILLDSVG LNGAT

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MLSRAGNVLW MEEDSKEEDS ASWTKNNTDT HLTHPANSSV FDNNHQITSL STFKSMLDVE  60
DDWCINGNAL HNHTHHADIN DITFSQNFTD PPDNLLLPSA DSSSSCSPSS SVFNNIDPSQ  120
LRFFLPPTRT FSSLHKPISN NPLDHPFDLG AEFGFLDVQA SNSSTLLNNG ENCSGLAGFQ  180
SFDDNLGNAL LLNRSKLLRP LESFPSVGAQ PTLFQKRAAL RKSLADKGSN LGGLSPDGGW  240
FSNRIDGGVG KTEMGDENGK KRKMIYADEF QDTSIDTSRF NYDSDDFTEH NNSKLDESGR  300
NVGNTSNANS TVTGGDQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS  360
ILGDAIEYLK ELLQRINDLH NELEFAPPGT ALTPSTSFHP LTPTPSSLSS RIKEELCPSS  420
FPSPNGQQPA RVEVRVRQGR AVNIHMFCSR RPGLLLSTVR ALDNLGLDIQ QAVISCFNGF  480
AMDIFRAEQC SEEQDVHPEQ IKAILLDSVG LNGAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	338	KKKGLPAKNLMAERRRRKK
2	332	339	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-107	bHLH family protein