PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023521076.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 365aa MW: 40926.6 Da PI: 7.2816

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023521076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l+++++++G g+W+++++ g+ R++k+c++rw +yl XP_023521076.1 14 KGLWSPDEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_023521076.1 67 RGPFSQQEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPVC VSADVDNESE NNKVPATSTS YRSNDNSSDE ATNNATETTP LPIIANSNSQ 180 IYSQTSQDFF RFQNSTTNTP SEMVDYLSFH HLNYAPSRIP NPNPNSLCFN LPPPPIPTKP 240 PVPTWEGTTF TGGNNHFYDA SNFSWGGLPD CAKSEKLHPT AIPEDIKWSE FVGNPYMVMG 300 NAAAAVQNQE FQFQTEPMFA DNMSRGTAAE TGFITEAGWQ RQQASSDAVY NKHLHTLTVS 360 FGNTL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRHSCCYKQ KLRKGLWSPD EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPNTHKPVC VSADVDNESE NNKVPATSTS YRSNDNSSDE ATNNATETTP LPIIANSNSQ  180
IYSQTSQDFF RFQNSTTNTP SEMVDYLSFH HLNYAPSRIP NPNPNSLCFN LPPPPIPTKP  240
PVPTWEGTTF TGGNNHFYDA SNFSWGGLPD CAKSEKLHPT AIPEDIKWSE FVGNPYMVMG  300
NAAAAVQNQE FQFQTEPMFA DNMSRGTAAE TGFITEAGWQ RQQASSDAVY NKHLHTLTVS  360
FGNTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-93	MYB family protein