PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023521177.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 509aa MW: 56585.4 Da PI: 6.821

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023521177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.3e-12	14	78	34	98
SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+++++ XP_023521177.1 14 LPVRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGQLVMGFRK 78 45999**********99899999999.*******************887.77777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MQAYFPPISQ SEGLPVRIQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT 60 VTFSRIDPGG QLVMGFRKAT NSSDTQDAKI STLPNGSHSG DASFSGVFQN LPLRAGDISL 120 HKIENFGGRM TSGQQPMSTM DKKGTRNIGS KNKRLLMHSE DALELRLTWE EAQDLLRPPP 180 SANPTIVTID DHEFEEYDEP PVFGKRTIFT VRPTGEQKQW AQCDDCSKWR KLPVDVLLPP 240 KWTCSDNIWD LSRCTCSAPE EMNTKEQENL LRASKDFKKR KIMKSQKSAQ ELEPSGLDAL 300 ASAAVLGDSM ADLQESGTTT RHPRHRQGCT CIVCIQPPSG KGKHKSTCTC NVCLTVKRRF 360 KTLMLRKKKR LSEREMETSL KEGNSQFDES GTSGTLRGSS LQINHSENER SQIRVKDEEA 420 ANSSGQIDLN CHPDREDMQL EVAGLSMMSL VEAASQPLDS YSKQIGVSSV TSEQHSSQPS 480 SAESERPLSE EGCHGSAHES TSDRGRGPH

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MQAYFPPISQ SEGLPVRIQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT  60
VTFSRIDPGG QLVMGFRKAT NSSDTQDAKI STLPNGSHSG DASFSGVFQN LPLRAGDISL  120
HKIENFGGRM TSGQQPMSTM DKKGTRNIGS KNKRLLMHSE DALELRLTWE EAQDLLRPPP  180
SANPTIVTID DHEFEEYDEP PVFGKRTIFT VRPTGEQKQW AQCDDCSKWR KLPVDVLLPP  240
KWTCSDNIWD LSRCTCSAPE EMNTKEQENL LRASKDFKKR KIMKSQKSAQ ELEPSGLDAL  300
ASAAVLGDSM ADLQESGTTT RHPRHRQGCT CIVCIQPPSG KGKHKSTCTC NVCLTVKRRF  360
KTLMLRKKKR LSEREMETSL KEGNSQFDES GTSGTLRGSS LQINHSENER SQIRVKDEEA  420
ANSSGQIDLN CHPDREDMQL EVAGLSMMSL VEAASQPLDS YSKQIGVSSV TSEQHSSQPS  480
SAESERPLSE EGCHGSAHES TSDRGRGPH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	368	KRRFKTLMLRKK
2	357	370	KRRFKTLMLRKKKR
3	365	371	LRKKKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-171	B3 family protein