PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023521919.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 133aa    MW: 15722 Da    PI: 6.2546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023521919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS125.65.9e-394130247373
            GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                     + n++ F +rf eal +ys+lfd++ea++pr+  er+  E+e+lgr+ivnv+aceg er+er et+++W+ r ++aGFk+vpl+++  k+++ ++
  XP_023521919.1   4 SFNTPFFNTRFKEALFHYSSLFDMYEATMPRDIPERHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQNLLKNVEKIV 98 
                     67999****************************************************************************************** PP

            GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++ + + + ++++  ++++gWk+r ++++S+W
  XP_023521919.1  99 NTEYHQDFVIDQDGSWMLQGWKGRIIYALSCW 130
                     **99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MNGSFNTPFF NTRFKEALFH YSSLFDMYEA TMPRDIPERH LCEKEILGRD IVNVIACEGL  60
ERVERPETYK QWQVRNTRAG FKQVPLDQNL LKNVEKIVNT EYHQDFVIDQ DGSWMLQGWK  120
GRIIYALSCW VVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.14e-56GRAS family protein