PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023521997.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 307aa MW: 34665 Da PI: 6.7899

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023521997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_023521997.1 14 KGPWTPEEDRILVDYIEKHGHGSWRALPNLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.2	1.2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E ++++ +++ lG++ W+ Ia++++ gRt++++k++w+++l XP_023521997.1 67 RGNFSDQEKQIIISLHASLGNK-WSIIASHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MSRASMLDEN GLKKGPWTPE EDRILVDYIE KHGHGSWRAL PNLAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF SDQEKQIIIS LHASLGNKWS IIASHLPGRT DNEIKNFWNT HLKKKLLQMG 120 IDPVTHMPTP FDHHTNTFSN LHHLLSLSTA PWDSSSRLHT QATQLAKAHL LQNVLQILSS 180 PSSLAISNNL FNTQQITDLL TYNHPIGSSF QTFPSNIQPL QEPLSCDDYA TTTPTLALEN 240 DCNRAESFYD MSQCPHSLPD LIPASPECSK IPTAIENNWV DIMDDETSNS YWKHAINQTP 300 PPPWSVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	1e-84	MYB family protein