PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522738.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26579 Da    PI: 6.3137
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93e-17193244253
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     rk+ +++keq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa
  XP_023522738.1 193 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRA 244
                     788899*********************************************8 PP
2HD-ZIP_I/II76.74e-25193244152
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 
                     +kk+rlskeq+++LE+sF+++++L+p++K++la++L+l+prqv+vWFqnrRA
  XP_023522738.1 193 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRA 244
                     69*************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MALGFCVGLG HGHGHGYGYG SGSGSGSGFG RVHDEXGSGS GFGRVHDEDG RDVKDEDEDD  60
DEKTIPGSGY GLDPPVQLDL LPLSPVPRSS HQSSSTLPFS CLSHRLMPEL GCTDKVLDVN  120
RPPALAAAVE MIPVEETEDK SPNSTVTSFQ MDFGVRNGGG RGRTRSKRSS DMEMETERSS  180
SRNSDDEENA SARKKLRLSK EQSAFLEQSF KQHSTLNPKQ KAALAKQLNL RPRQVEVWFQ  240
NRRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RTRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-29HD-ZIP family protein