PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523160.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 268aa    MW: 30568.7 Da    PI: 7.1188
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a+  g++Rt+k+c++rw++yl
   XP_023523160.1 21 RGPWTVEEDTLLIHYIAAHGEGQWNLLAKQAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding48.91.5e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_023523160.1  74 RGNLTLQEQLLILELHSKWGNR-WSKIAQELP-GRTDNEIKNYWRT 117
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MAGVSNTAAH RPSEEESELR RGPWTVEEDT LLIHYIAAHG EGQWNLLAKQ AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTLQ EQLLILELHS KWGNRWSKIA QELPGRTDNE IKNYWRTRVQ  120
KQLRQLKVQA HSRKLLDAIC HLSMLEAMDQ TSNYSINLPP SLHNMNLPNS SNSTVVLPAN  180
HGSRAPPPPP PPRSVQQWPE VSAWPPSPCG EFMEAWRFDM VGQKQQHEAV GALGDWEVGD  240
RDAQMIAPDW VLEDAMVENL WSLDHHLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-61MYB family protein