PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523177.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 218aa MW: 25079.3 Da PI: 6.6722

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.8e-15	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv+ v ++G ++W+ Ia+ g++R +k+c++rw +yl XP_023523177.1 9 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLKRNGKSCRLRWVNYL 56 79****************************9***********97 PP
2	Myb_DNA-binding	53.8	4.3e-17	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+ l +d++ ++G++ W++Iar+++ gRt++++k++w+++ XP_023523177.1 62 RGKMSPQEERLVLDLHSKWGNR-WSKIARKLP-GRTDNEIKNFWRTH 106 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MVQEESVRKG PWTEQEDFQL VCFVGLFGDR RWDFIAKVSG LKRNGKSCRL RWVNYLHPGL 60 KRGKMSPQEE RLVLDLHSKW GNRWSKIARK LPGRTDNEIK NFWRTHVRKL AQEKKKAAVH 120 HVVVSPSSSS TVDSVPTIDI GEESFYDTGG DWSCYMGEED EKGYSYSMDD IWRDIDDESV 180 VKAVCDEKLS CGPVASPAPW EYGEYSPPWK VAEEKFGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.1	2e-79	MYB family protein