PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523512.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 526aa MW: 59793 Da PI: 6.9193

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38	4.3e-12	3	51	37	87
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k+ e g++rs+k+Ckek+en+ k++k++ke + + +++s+++++f+qlea XP_023523512.1 3 KLGELGYHRSAKKCKEKFENVYKYHKRTKEVRCG--KPDSKSYKFFEQLEA 51 67899**************************9..588889*****85 PP
2	trihelix	102.4	3.4e-32	347	432	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+a XP_023523512.1 347 RWPKVEVEALIKLRTNLDAKYQENGPKGPLWEEISSAMKRLGYNRNAKRCKEKWENINKYFKKVKESKKTR-PEDSKTCPYFHQLDA 432 8******************************************************************97.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
IRKLGELGYH RSAKKCKEKF ENVYKYHKRT KEVRCGKPDS KSYKFFEQLE ALENHPPLNF 60 HSHLSKPPPP ATAASPPTTV ISHIPSTVPS TTTAVPHLMN ISFTQPNPTI HLQSMPPPPP 120 LPFNNPTNLA TTIAPLFQTN VSSGAAGLGF EADLISNSTS DDVDSSTSSD EASRQRKKRK 180 WKDFFERLMR EVIERQEEMQ KRFLEAIEKR EQERVAREEA WRMQEMAKIN REKEILAQER 240 SMAAAKDAAI TSFLQKLTQS HPNDNNPSPS LPPPPPPPPR QQPISISNPT PVVQPPTQQA 300 STLQVVHPNS TPQKLVNNNE YLQIEIVKRS DNGGESYRMS PASSSSRWPK VEVEALIKLR 360 TNLDAKYQEN GPKGPLWEEI SSAMKRLGYN RNAKRCKEKW ENINKYFKKV KESKKTRPED 420 SKTCPYFHQL DALYKEKNIN NNNGNKFDNV IIGSSTPLMV RPEQQWPPQQ ELVRSNSANK 480 DMESEPMDRD EKDEDDDEDD DEEEDEEGGE NYEIVASKPA SMSVAE

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

IRKLGELGYH RSAKKCKEKF ENVYKYHKRT KEVRCGKPDS KSYKFFEQLE ALENHPPLNF  60
HSHLSKPPPP ATAASPPTTV ISHIPSTVPS TTTAVPHLMN ISFTQPNPTI HLQSMPPPPP  120
LPFNNPTNLA TTIAPLFQTN VSSGAAGLGF EADLISNSTS DDVDSSTSSD EASRQRKKRK  180
WKDFFERLMR EVIERQEEMQ KRFLEAIEKR EQERVAREEA WRMQEMAKIN REKEILAQER  240
SMAAAKDAAI TSFLQKLTQS HPNDNNPSPS LPPPPPPPPR QQPISISNPT PVVQPPTQQA  300
STLQVVHPNS TPQKLVNNNE YLQIEIVKRS DNGGESYRMS PASSSSRWPK VEVEALIKLR  360
TNLDAKYQEN GPKGPLWEEI SSAMKRLGYN RNAKRCKEKW ENINKYFKKV KESKKTRPED  420
SKTCPYFHQL DALYKEKNIN NNNGNKFDNV IIGSSTPLMV RPEQQWPPQQ ELVRSNSANK  480
DMESEPMDRD EKDEDDDEDD DEEEDEEGGE NYEIVASKPA SMSVAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-56	Trihelix family protein