PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523558.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28768.9 Da    PI: 6.8621
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  XP_023523558.1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP
2K-box52.12.8e-18921721599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ ++e+++L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l  +++kK  ll+eq+e+++  e+++  en++Lr+++ 
  XP_023523558.1  92 KQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKK--LLMEQLEQSR--EQRAMLENETLRRQVS 172
                     56689***********************************************997..9*****9765..6666667888999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKHTLSRYN RCIESSETPI DGHKAEYLHL QKQEHEEVDN LRDEITTLQM KQLQLLGKDL  120
TGLGFKELQN LEQQLNEGLL LVKEKKLLME QLEQSREQRA MLENETLRRQ VSELRCLFPP  180
VDCPLPAYLE YCSLEKKKVG IRIPDVACNS EIERGDSDTT LHLGLPSHVY CKRKEAERDT  240
HSNDSGSQMG LL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-64MIKC_MADS family protein