PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523569.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 275aa    MW: 31141 Da    PI: 8.9272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+ +W+ ++   g+ R+ k+c++rw +yl
   XP_023523569.1 15 KGPWTPEEDIILVSYIQEHGPSNWRWVPTNTGLLRCSKSCRLRWTNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding49.41.1e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_023523569.1  68 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MMGRHPCCDK VGVKKGPWTP EEDIILVSYI QEHGPSNWRW VPTNTGLLRC SKSCRLRWTN  60
YLRPGIKRGN FTDHEEKMIV HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLKKM  120
HSGSDGAQTR ISKGQWERRL QTDIHTAKRA LCEALSLHKP SSYETMEASK PQQSTATYAS  180
SAENIAKLLE NWMKKSPKSS TQSEGSQSGM NYNNSPEVNL DDSLFNFNDN SNSPSTSTTN  240
QVPPLSFLEK WLFDDGALAH VHADHIISVS LEAET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-103MYB family protein